The threshold options a declaration carries, or nothing at all.
None of the three has a default, and the omission is the whole point:
a guessed significance line sorts every point on the figure onto the wrong
side silently, a significanceDirection fixed to 'above' selects precisely
the points that failed to reach significance on a raw p axis, and a
Manhattan's x-axis lines are chromosome dividers rather than an effect
cutoff. Absent, the trace reports no findings, which is the truthful smaller
reading.
The threshold options a declaration carries, or nothing at all.
None of the three has a default, and the omission is the whole point: a guessed significance line sorts every point on the figure onto the wrong side silently, a
significanceDirectionfixed to'above'selects precisely the points that failed to reach significance on a raw p axis, and a Manhattan's x-axis lines are chromosome dividers rather than an effect cutoff. Absent, the trace reports no findings, which is the truthful smaller reading.